Publications:  John Allen

Puthiyaveetil S, Ibrahim IM, Allen JF (2012) . Oxidation-reduction signalling components in regulatory pathways of state transitions and photosystem stoichiometry adjustment in chloroplasts. Plant Cell Environ vol. 35, (2) 347-359.

Allen JF, de Paula WB, Puthiyaveetil S et al. (2011) . A structural phylogenetic map for chloroplast photosynthesis. Trends Plant Sci vol. 16, (12) 645-655.

McInerney JO, Martin WF, Koonin EV et al. (2011) . Planctomycetes and eukaryotes: A case of analogy not homology. BIOESSAYS vol. 33, (11) 810-817.

Allen JF, Santabarbara S, Allen CA et al. (2011) . Discrete redox signaling pathways regulate photosynthetic light-harvesting and chloroplast gene transcription. PLoS One vol. 6, (10)

Allen JF (2010) . Redox homeostasis in the emergence of life. On the constant internal environment of nascent living cells. Journal of Cosmology vol. 10, 3362-3373.

Lane N, Allen JF, Martin W (2010) . How did LUCA make a living? Chemiosmosis in the origin of life. Bioessays vol. 32, (4) 271-280.

Lane N, Allen JF, Martin W (2010) . BioEssays 4/2010. Bioessays vol. 32, (4)

Allen JF (2010) . Research and how to promote it in a university. FUTURE MED CHEM vol. 2, (1) 15-20.

Puthiyaveetil S, Ibrahim IM, Jelicić B et al. (2010) . Transcriptional control of photosynthesis genes: the evolutionarily conserved regulatory mechanism in plastid genome function. Genome Biol Evol vol. 2, 888-896.

Juric S, Hazler-Pilepic K, Tomasic A et al. (2009) . Tethering of ferredoxin:NADP plus oxidoreductase to thylakoid membranes is mediated by novel chloroplast protein TROL. PLANT J vol. 60, (5) 783-794.

Puthiyaveetil S, Allen JF (2009) . Chloroplast two-component systems: evolution of the link between photosynthesis and gene expression. Proc Biol Sci vol. 276, (1665) 2133-2145.

Puthiyaveetil S, Kavanagh TA, Cain P et al. (2008) . The ancestral symbiont sensor kinase CSK links photosynthesis with gene expression in chloroplasts. Proc Natl Acad Sci U S A vol. 105, (29) 10061-10066.

Puthiyaveetil S, Allen JF (2008) . Transients in chloroplast gene transcription. Biochem Biophys Res Commun vol. 368, (4) 871-874.

Deusch O, Landan G, Roettger M et al. (2008) . Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor. MOL BIOL EVOL vol. 25, (4) 748-761.

Kirchhoff H, Haferkamp S, Allen JF et al. (2008) . Protein diffusion and macromolecular crowding in thylakoid membranes. PLANT PHYSIOL vol. 146, (4) 1571-1578.

Allen JF, Puthiyaveetil S (2008) . Chloroplast sensor kinase - The redox messenger of organelle gene expression. vol. 1777, S108-S109.

Russell MJ, Allen JF, Milner-White EJ (2008) . Inorganic complexes enabled the onset of life and oxygenic photosynthesis. Photosynthesis 2007. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis, Editors: Allen, JF, Gantt, E, Golbeck, JH, Osmond, B et al., Springer (Heidelberg),

Allen JF, Gantt E, Golbeck JH et al. (2008) . Photosynthesis 2007. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis.Springer (Heidelberg),

Allen CA, Allen JF (2008) . Redox effects on chloroplast protein synthesis and phosphorylation. Photosynthesis 2007. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis, Editors: Allen, JF, Gantt, E, Golbeck, JH, Osmond, B et al., Springer (Heidelberg),

Allen JF, Allen CA, Puthiyaveetil S (2008) . Redox switches and evolutionary transitions. Photosynthesis 2007. Energy from the Sun. Proceedings of the 14th International Congress on Photosynthesis, Editors: Allen, JF, Gantt, E, Golbeck, JH, Osmond, B et al., Springer (Heidelberg),

Allen JF, Martin W (2007) . Evolutionary biology - Out of thin air. NATURE vol. 445, (7128) 610-612.

Puthiyaveetil S, Allen J (2007) . A bacterial-type sensor kinase couples electron transport to gene expression in chloroplasts. PHOTOSYNTH RES vol. 91, (2-3) 269-269.

Allen CA, Giezen MVD, Allen JF (2007) . Origin, function and transmission of mitochondria. Origins of Mitochondria and Hydrogenosomes, Editors: Martin, W, Müller, M, Springer-Verlag (Berlin Heidelberg),

Govindjee, Beatty JT, Allen JF (2006) . Celebrating the millennium – historical highlights of photosynthesis research, Part 3. Discoveries in photosynthesis, Editors: Govindjee, Beatty, JT, Gest, H, Allen, JF et al., Springer (Dordrecht),

GOVINDJEE S, BEATTY JT, GEST H et al. (2006) . Discoveries in Photosynthesis.Springer

Ferris JP, Matthews CN, Schwartzman DW et al. (2006) . From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya - Discussion. Philosophical Transactions of the Royal Society B-Biological Sciences vol. 361, (1474) 1806-1808.

Allen JF (2006) . Plastoquinone redox control of chloroplast thylakoid protein phosphorylation and distribution of excitation energy between photosystems: discovery, background, implications. Discoveries in photosynthesis, Editors: Govindjee, Beatty, JT, Gest, H, Allen, JF et al., Springer (Dordrecht),

Gest H, Beatty JT, Allen JF et al. (2006) . Preface. Discoveries in photosynthesis, Editors: Govindjee, Beatty, JT, Gest, H, Allen, JF et al., Springer (Dordrecht),

Allen JF (2005) . Photosynthesis: the processing of redox signals in chloroplasts. Curr Biol vol. 15, (22) R929-R932.

Allen JF, Puthiyaveetil S, Ström J et al. (2005) . Energy transduction anchors genes in organelles. Bioessays vol. 27, (4) 426-435.

Allen JF (2005) . A redox switch hypothesis for the origin of two light reactions in photosynthesis. FEBS Lett vol. 579, (5) 963-968.

ALLEN JF, PUTHIYAVEETIL S (2005) . Choroflexus aurantiacus and the origin of oxygenic, two-light reaction photosynthesis in failure to switch between type I and type II reaction centres. Photosynthesis : fundamental aspects to global perspectives : proceedings of the 13th International Congress on Photosynthesis, Editors: van der Est, A, Bruce, D, Alliance Communications Group (Lawrence, Kansas),

Ström J, Forsberg J, Puthiyaveetil S et al. (2005) . Cytochrome b6 in redox regulation of photosynthesis and chloroplast gene expression. Photosynthesis: Fundamental Aspects to Global Perspectives, Editors: Est, AVD, Bruce, D, Edition. 1, Alliance Communications Group (Lawrence, Kansas),

Årsköld SP, Ström J, Allen JF et al. (2005) . Low-Temperature Absorption and Magnetic Circular Dichroism of the Four Haems of the Cytochrome b6f Complex. Photosynthesis: Fundamental Aspects to Global Perspectives, Editors: Est, AVD, Bruce, D, Edition. 1, Alliance Communications Group (Lawrence, Kansas),

Allen JF (2005) . Power, sex, suicide: Mitochondria and the meaning of life. Nature vol. 437, (7063) 1235-1236.

Allen JF (2004) . Cytochrome b6f: structure for signalling and vectorial metabolism. Trends Plant Sci vol. 9, (3) 130-137.

Govindjee, Allen JF, Beatty JT (2004) . Celebrating the millennium: historical highlights of photosynthesis research, part 3. PHOTOSYNTH RES vol. 80, (1-3) 1-13.

ALLEN JF (2004) . Chloroplast Redox Poise and Signaling. Encyclopedia of Biological Chemistry, Editors: Lennarz, WJ, Lane, MD, Elsevier (San Diego),

Allen JF (2004) . Chloroplast-Redox Poise and Signaling. Encyclopedia of Biological Chemistry, Editors: Lennarz, WJ, Lane, MD, Edition. 1, Elsevier (San Diego),

Allen JF, Mullineaux CW (2004) . Probing the mechanism of state transitions in oxygenic photosynthesis by chlorophyll fluorescence spectroscopy, kinetics and imaging. Chlorophyll fluorescence – a signature of photosynthesis, Editors: Papageorgiou, G, Govindjee, Springer (Dordrecht),

Allen JF (2003) . Botany. State transitions--a question of balance. Science vol. 299, (5612) 1530-1532.

Foyer CH, Allen JF (2003) . Lessons from redox signaling in plants. ANTIOXID REDOX SIGN vol. 5, (1) 3-5.

Allen JF (2003) . Superoxide as an obligatory, catalytic intermediate in photosynthetic reduction of oxygen by adrenaline and dopamine. Antioxid Redox Signal vol. 5, (1) 7-14.

Horner DS, Tielens AGM, Martin W et al. (2003) . Biochemical and evolutionary aspects of anaerobically functioning mitochondria - Discussion. PHILOS T ROY SOC B vol. 358, (1429) 213-215.

Allen JF, Raven JA (2003) . Chloroplasts and mitochondria: functional genomics and evolution - Papers of Discussion Meetings organized and edited by J. F. Allen and J. A. Raven - Meetings held at The Royal Society on 26 and 27 June 2002 and at the Novartis Foundation on 28 June 2002 - Introduction. PHILOS T ROY SOC B vol. 358, (1429) 3-4.

Tielens AGM, Herrmann RG, Allen JF (2003) . Eukaryotic genome evolution: rearrangement and coevolution of compartmentalized genetic information - Discussion. PHILOS T ROY SOC B vol. 358, (1429) 97-97.

Allen JF, Raven JA, Douglas AE et al. (2003) . General discussion. PHILOS T ROY SOC B vol. 358, (1429) 217-222.

Horner D, Douglas AE, Raven JA et al. (2003) . Genomes at the interface between bacteria and organelles - Discussion. PHILOS T ROY SOC B vol. 358, (1429) 17-18.

Tielens AGM, Embley TM, Martin W et al. (2003) . Mitochondria and hydrogenosomes are two forms of the same fundamental organelle - Discussion. PHILOS T R SOC B vol. 358, (1429) 202-203.

Gray JC, Wilson RJM, Raven JA et al. (2003) . Parasite plastids: maintenance and functions - Discussion. PHILOS T ROY SOC B vol. 358, (1429) 162-164.

Horner DS, Allen JF, Cavalier-Smith T et al. (2003) . The function of genomes in bioenergetic organelles - Discussion. PHILOS T ROY SOC B vol. 358, (1429) 37-38.

Allen JF (2003) . The function of genomes in bioenergetic organelles. vol. 358, 19-37.

Allen JF, Gray JC, Horner DS et al. (2003) . Coordination of plastid and nuclear gene expression - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences vol. 358, (1429) 144-145.

Allen JF (2003) . Cyclic, pseudocyclic and noncyclic photophosphorylation: new links in the chain. Trends Plant Sci vol. 8, (1) 15-19.

Fray R, Howe CJ, Leaver CJ et al. (2003) . Evolution of the chloroplast genome - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences vol. 358, (1429) 106-107.

van der Giezen M, Cavalier-Smith T, Martin W et al. (2003) . Genomic reduction and evolution of novel genetic membranes and protein-targeting machinery in eukaryote-eukaryote chimaeras (meta-algae) - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences vol. 358, (1429) 133-134.

Raven JA, Allen JF (2003) . Genomics and chloroplast evolution: what did cyanobacteria do for plants?. GENOME BIOL vol. 4, (3) Article 209,

Whatley FR, Andersson SGE, van der Giezen M et al. (2003) . On the origin of mitochondria: a genomics perspective - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences vol. 358, (1429) 177-179.

Blankenship RE, Bauer CE, Allen JF et al. (2003) . Redox and light regulation of gene expression in photosynthetic prokaryotes - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences vol. 358, (1429) 153-154.

Allen JF (2003) . State transitions - a question of balance. Science vol. 299, (5612) 1530-1532.

Allen JF (2003) . Why chloroplasts and mitochondria contain genomes. Comp Funct Genomics vol. 4, (1) 31-36.

Britt RD, Melis A, Rutherford AW et al. (2002) . Probing green algal hydrogen production - Discussion. PHILOS T ROY SOC B vol. 357, (1426) 1507-1509.

Allen JF, Race HL (2002) . Will the real LHC II kinase please step forward?. Sci STKE vol. 2002, (155)

Allen J (2002) . Photosynthesis of ATP-electrons, proton pumps, rotors, and poise. Cell vol. 110, (3) 273-276.

Allen JF (2002) . Photosynthesis - telling it like it is. Trends in Plant Science vol. 7, 291-292.

ALLEN JF (2002) . Photosynthesis - telling it like it is. Trends Plant Sci. vol. 7, (6) 281-282.

Allen JF (2002) . Photosynthesis for ramblers and browsers. Trends in Plant Science vol. 7, 376-377.

Allen JF (2002) . Plastoquinone redox control of chloroplast thylakoid protein phosphorylation and distribution of excitation energy between photosystems: discovery, background, implications. Photosynth Res vol. 73, (1-3) 139-148.

Allen JF (2001) . Hypothesis, induction and background knowledge. Data do not speak for themselves. Replies to Donald A Gillies, Lawrence A Kelley and Michael Scott. BIOESSAYS vol. 23, (9) 861-862.

Forsberg J, Rosenquist M, Fraysse L et al. (2001) . Redox signalling in chloroplasts and mitochondria: genomic and biochemical evidence for two-component regulatory systems in bioenergetic organelles. Biochem Soc Trans vol. 29, (Pt 4) 403-407.

Allen JF (2001) . In silico veritas - Data-mining and automated discovery: the truth is in there. EMBO REP vol. 2, (7) 542-544.

Allen JF, Forsberg J (2001) . Molecular recognition in thylakoid structure and function. Trends Plant Sci vol. 6, (7) 317-326.

Pfannschmidt T, Allen JF, Oelmuller R (2001) . Principles of redox control in photosynthesis gene expression. PHYSIOL PLANTARUM vol. 112, (1) 1-9.

Allen JF (2001) . Comment on the editorial 'Back to Darwin?' in EMBO reports, November 2000. EMBO REP vol. 2, (2) 76-76.

Allen JF (2001) . Bioinformatics and discovery: induction beckons again. Bioessays vol. 23, (1) 104-107.

Forsberg J, Allen JF (2001) . Protein tyrosine phosphorylation in the transition to light state 2 of chloroplast thylakoids. Photosynth Res vol. 68, (1) 71-79.

ALLEN JF, FORSBERG J (2001) . The balancing act: redox poise and signalling. Conference: 12th International Congress on Photosynthesis (Brisbane Convention & Exhibition Centre, Queensland, Australia) from: 18/08/2001 to: 23/08/2001,

Allen JF, Pfannschmidt T (2000) . Balancing the two photosystems: photosynthetic electron transfer governs transcription of reaction centre genes in chloroplasts. Philos Trans R Soc Lond B Biol Sci vol. 355, (1402) 1351-1359.

Hideg E, Barber J, Heber U et al. (2000) . Supermolecular structure of photosystem II and location of the PsbS protein - Discussion. PHILOS T ROY SOC B vol. 355, (1402) 1343-1344.

Struglics A, Fredlund KM, Konstantinov YM et al. (2000) . Protein phosphorylation/dephosphorylation in the inner membrane of potato tuber mitochondria. FEBS Lett vol. 475, (3) 213-217.

Laisk A, Allen JF, Osmond B et al. (2000) . Balancing the two photosystems: photosynthetic electron transfer governs transcription of reaction centre genes in chloroplasts - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences vol. 355, (1402) 1357-1359.

Laisk A, Badger MR, Allen JF et al. (2000) . Electron flow to oxygen in higher plants and algae: rates and control of direct photoreduction (Mehler reaction) and rubisco oxygenase - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences vol. 355, (1402) 1445-1446.

Tullberg A, Alexciev K, Pfannschmidt T et al. (2000) . Photosynthetic electron flow regulates transcription of the psaB gene in pea (Pisum sativum L.) chloroplasts through the redox state of the plastoquinone pool. Plant Cell Physiol. vol. 41, (9) 1045-1045.

Struglics A, Fredlund KM, Konstantinov YM et al. (2000) . Protein phosphorylation/dephosphorylation in the inner membrane of potato tuber mitochondria. Febs Letters vol. 475, 213-217.

Struglics A, Fredlund KM, Moller IM et al. (1999) . Phosphoproteins and protein kinase activities intrinsic to inner membranes of potato tuber mitochondria. PLANT CELL PHYSIOL vol. 40, (12) 1271-1279.

Pfannschmidt T, Nilsson A, Tullberg A et al. (1999) . Direct transcriptional control of the chloroplast genes psbA and psaAB adjusts photosynthesis to light energy distribution in plants. IUBMB Life vol. 48, (3) 271-276.

Pfannschmidt T, Nilsson A, Allen JF (1999) . Photosynthetic control of chloroplast gene expression. NATURE vol. 397, (6720) 625-628.

Allen JF, Allen CA (1999) . A mitochondrial model for premature ageing of somatically cloned mammals. Iubmb Life vol. 48, (4) 369-372.

Dilly-Hartwig H, Allen JF, Paulsen H et al. (1998) . Truncated recombinant light harvesting complex II proteins are substrates for a protein kinase associated with photosystem II core complexes. FEBS LETT vol. 435, (1) 101-104.

Escobar Galvis ML, Allen JF, Hâkansson G (1998) . Protein synthesis by isolated pea mitochondria is dependent on the activity of respiratory complex II. Curr Genet vol. 33, (5) 320-329.

Struglics A, Fredlund KM, Møller IM et al. (1998) . Two subunits of the F0F1-ATPase are phosphorylated in the inner mitochondrial membrane. Biochem Biophys Res Commun vol. 243, (3) 664-668.

Silverstein TP, Allen JF (1998) . A redox-controlled pH-dependent thylakoid protein kinase: Is plasto-quinol the activating ligand?. Biophysical Journal vol. 74, (2) A79-A79.

Allen JF (1998) . Light, time and micro-organisms. Microbial responses to light and time, Editors: Caddick, MX, Baumberg, S, Hodgson, DA, Phillips-Jones, MK et al., Cambridge University Press (Cambridge),

Galvis MLE, Allen JF, Hakansson G (1998) . Mitochondrial gene expression in pea is regulated by the activity of respiratory complex II. Editors: Møller, IM, Gardeström, P, Glimelius, K, Glaser, E et al., 171-174.

Race HL, Forsberg J, Hind G et al. (1998) . Photosystem II-associated protein kinase phosphorylates a novel 6.3 kDa protein which subsequently dissociates from photosystem II core complexes. Editors: Garab, G, 1859-1863.

Struglics A, Fredlund KM, Moller IM et al. (1998) . Protein phosphorylation in intact mitochondria and inner mitochondrial membranes. Editors: Moller, IMGPGKGE, 401-405.

Nilsson A, Stys D, Drakenberg T et al. (1997) . Phosphorylation controls the three-dimensional structure of plant light harvesting complex II. J Biol Chem vol. 272, (29) 18350-18357.

Allen JF, Matthijs HCP (1997) . Complementary adaptations, photosynthesis and phytochrome. TRENDS PLANT SCI vol. 2, (2) 41-43.

Allen JF, Nilsson A (1997) . Redox signalling and the structural basis of regulation of photosynthesis by protein phosphorylation. Physiologia Plantarum vol. 100, (4) 863-868.

Allen JF (1996) . Separate sexes and the mitochondrial theory of ageing. J Theor Biol vol. 180, (2) 135-140.

Allen JF, Raven JA (1996) . Free-radical-induced mutation vs redox regulation: costs and benefits of genes in organelles. J Mol Evol vol. 42, (5) 482-492.

Allen JF (1996) . Redox control of gene expression involving iron-sulfur proteins. Change of oxidation-state or assembly disassembly of Fe-S clusters? Reply. FEBS LETT vol. 382, (1-2) 220-221.

Allen JF (1996) . Iron-sulphur proteins in redox control of transcription. Febs Letters vol. 382, 220-221.

Stys D, Allen JF (1996) . Specific blocking of complex formation in thylakoid membranes by peptide fragments of the light harvesting complex II. Plant Membrane Biology, Editors: Brodelius, P, Møller, IM, Oxford University Press (Oxford),

Cheng L, Allen JF (1996) . Studies on the phosphorylation and dephosphorylation reactions of thylakoid membrane proteins using synthetic peptides. Plant Membrane Biology, Editors: Brodelius, P, Møller, IM, Oxford University Press (Oxford),

Håkansson G, Allen JF (1995) . Histidine and tyrosine phosphorylation in pea mitochondria: evidence for protein phosphorylation in respiratory redox signalling. FEBS Lett vol. 372, (2-3) 238-242.

Allen JF, Alexciev K, Håkansson G (1995) . Photosynthesis. Regulation by redox signalling. Curr Biol vol. 5, (8) 869-872.

STYS D, STANCEK M, CHENG LL et al. (1995) . COMPLEX-FORMATION IN PLANT THYLAKOID MEMBRANES - COMPETITION STUDIES ON MEMBRANE-PROTEIN INTERACTIONS USING SYNTHETIC PEPTIDE-FRAGMENTS. PHOTOSYNTH RES vol. 44, (3) 277-285.

Cheng LL, Allen JF (1995) . ATP-dependent effects on redox regulation of chloroplast protein synthesis. Editors: Mathis, P, 579-582.

Allen JF, Davies PN, Forsberg J et al. (1995) . Acid-labile, histidine phophoproteins in chloroplasts and mitochondria: possible candidates for redox sensor kinases. Editors: Mathis, P, 699-702.

Cheng LL, Stys D, Allen JF (1995) . Effects of Synthetic Peptides on Thylakoid Phosphoprotein Phosphatase Reactions. vol. 93, 173-178.

Davies PN, Forsberg J, Allen JF (1995) . Localisation of a thylakoid protein kinase and its relation to the 64 kDa LHC-II kinase and reverse redox titrator. Editors: Mathis, P, 321-324.

Allen JF (1995) . Origins of Photosynthesis. Nature vol. 376, (6535) 26-26.

ALLEN JF (1995) . PLANT-CELL BIOLOGY WORKSHOP ON THYLAKOID PROTEIN-PHOSPHORYLATION - LUND-UNIVERSITY, SWEDEN, 27-29-MARCH-1994. PHYSIOL PLANTARUM vol. 93, (1) 172-172.

Allen CA, Hakansson G, Allen JF (1995) . Redox Conditions Specify the Proteins Synthesized by Isolated-Chloroplasts and Mitochondria. Redox Report vol. 1, (2) 119-123.

Struglics A, Allen JF (1995) . Redox dependent protein phosphorylation as a fundamental feature of bioenergetic membranes in cyanobacterial thylakoids, purple bacterial chromatophores and mitochondrial inner membranes. Editors: Mathis, P, 413-416.

Allen JF, Dube SL, Davison PA (1995) . Screening for mutants deficient in state transitions using time. Editors: Mathis, P, 679-682.

Liker E, Cheng L, Garab G et al. (1995) . Sensitivity of the phosphorylation of different phosphoproteins to Q(0) and Q(1) site inhibitors of the cytochrome B/F complex in chloroplast thylakoids. Photosynthesis: From Light to Biosphere, Vol I, Editors: Mathis, P,

Stys D, Drakenberg T, Spangfort MD et al. (1995) . Structure and magnesium binding of peptide fragments of LHCII in its phosphorylated and unphosphorylated forms studied by multinuclear NMR. Editors: Mathis, P, 127-130.

ALLEN JF (1995) . THYLAKOID PROTEIN-PHOSPHORYLATION, STATE-1-STATE-2 TRANSITIONS, AND PHOTOSYSTEM STOICHIOMETRY ADJUSTMENT - REDOX CONTROL AT MULTIPLE LEVELS OF GENE-EXPRESSION. vol. 93, 196-205.

Allen JF (1995) . Thylakoid Protein-Phosphorylation, State-1-State-2 Transitions, and Photosystem Stoichiometry Adjustment - Redox Control at Multiple Levels of Gene-Expression. Physiologia Plantarum vol. 93, (1) 196-205.

Cheng L, Spangfort MD, Allen JF (1994) . Substrate specificity and kinetics of thylakoid phosphoprotein phosphatase reactions. Biochim Biophys Acta vol. 1188, (1-2) 151-157.

NORE BF, HARRISON MA, KEEN JN et al. (1994) . PARTIAL-PURIFICATION OF A CYANOBACTERIAL MEMBRANE-PROTEIN WITH AMINO-TERMINAL SEQUENCE SIMILARITY TO THE N-METHYLPHENYLALANINE PILINS. ACTA CHEM SCAND vol. 48, (7) 578-581.

SILVERSTEIN TP, CHENG LL, ALLEN JF (1994) . REDOX TITRATION OF CHLOROPLAST THYLAKOID PROTEIN-PHOSPHORYLATION - EVIDENCE FOR A SINGLE REDOX-CONTROLLED KINASE AND A REDOX-INDEPENDENT PHOSPHATASE. BIOPHYS J vol. 66, (2) A114-A114.

Allen JF (1993) . Control of gene expression by redox potential and the requirement for chloroplast and mitochondrial genomes. J Theor Biol vol. 165, (4) 609-631.

Silverstein T, Cheng L, Allen JF (1993) . Chloroplast thylakoid protein phosphatase reactions are redox-independent and kinetically heterogeneous. FEBS Lett vol. 334, (1) 101-105.

SILVERSTEIN T, CHENG LL, ALLEN JF (1993) . REDOX TITRATION OF MULTIPLE PROTEIN PHOSPHORYLATIONS IN PEA CHLOROPLAST THYLAKOIDS. BIOCHIM BIOPHYS ACTA vol. 1183, (1) 215-220.

Allen JF (1993) . Redox control of transcription: sensors, response regulators, activators and repressors. FEBS Lett vol. 332, (3) 203-207.

ALLEN JF (1993) . REDOX CONTROL OF GENE-EXPRESSION AND THE FUNCTION OF CHLOROPLAST GENOMES - AN HYPOTHESIS. PHOTOSYNTH RES vol. 36, (2) 95-102.

Dube SL, Allen JF (1993) . Characterization of State Transitions Invivo with the Ratio of Variable Fluorescence Measured at 2 Wavelengths. Plant Physiology vol. 102, (1) 144-144.

Harrison MA, Allen JF (1993) . Differential Phosphorylation of Individual Lhc-Ii Polypeptides During Short-Term and Long-Term Acclimation to Light Regime in the Green-Alga Dunaliella-Salina. Biochimica Et Biophysica Acta vol. 1141, (1) 37-44.

Allen JF (1993) . Fotosyntes — evolutionens mirakulösa ingenjörskonst. Editors: Struglics, A, Jarl-Sunesson, C, Häkansson, G, vol. 25, pp. 80-87. Notes: Fotosyntes — evolutionens mirakulösa ingenjörskonst Allen, J. F. Photosynthesis – evolution's miracle of design engineering Swedish,

Gong H, Nilsen S, Allen JF (1993) . Photoinhibition of Photosynthesis Invivo - Involvement of Multiple Sites in a Photodamage Process under Co2-Free and O2-Free Conditions. Biochimica Et Biophysica Acta vol. 1142, (1-2) 115-122.

GONG H, NILSEN S, ALLEN JF (1992) . A PHOTODAMAGE PROCESS WHICH IS DISTINGUISHABLE FROM PHOTOINACTIVATION IS CHARACTERIZED AS INACTIVATION OF MULTIPLE SITES. PHOTOSYNTH RES vol. 34, (1) 232-232.

HARRISON MA, MELIS A, ALLEN JF (1992) . RESTORATION OF IRRADIANCE-STRESSED DUNALIELLA-SALINA (GREEN-ALGA) TO PHYSIOLOGICAL GROWTH-CONDITIONS - CHANGES IN ANTENNA SIZE AND COMPOSITION OF PHOTOSYSTEM-II. BIOCHIM BIOPHYS ACTA vol. 1100, (1) 83-91.

Harrison MA, Allen JF (1992) . Protein phosphorylation and Mg2+ influence light harvesting and electron transport in chloroplast thylakoid membrane material containing only the chlorophyll-a/b-binding light-harvesting complex of photosystem II and photosystem I. Eur J Biochem vol. 204, (3) 1107-1114.

Allen JF (1992) . Protein phosphorylation in regulation of photosynthesis. Biochim Biophys Acta vol. 1098, (3) 275-335.

Gong H, Nilsen S, Allen JF (1992) . A photodamage process which is distinguishable from photoinactivation is characterized as inactivation of multiple sites. Research in Photosynthesis, Editors: Murata, N, Edition. 4, Kluwer (Dordrecht),

Allen JF (1992) . How does protein phosphorylation regulate photosynthesis?. Trends Biochem Sci vol. 17, (1) 12-17.

Allen JF (1992) . Molecular Structural Effects of Protein-Phosphorylation in Regulation of Photosynthesis. Photosynthesis Research vol. 34, (1) 118-118.

Allen JF (1992) . Molecular structural effects of protein phosphorylation in regulation of photosynthesis. Research in Photosynthesis, Editors: Murata, N, Edition. 1, Kluwer (Dordrecht),

Nore BF, Harrison MA, Andersson BA et al. (1992) . Partial-Purification of the 15 Kda Phosphoprotein of Synechococcus 6301. Photosynthesis Research vol. 34, (1) 223-223.

Allen JF (1992) . Protein-Phosphorylation and Lhcii Structure - Reply. Trends in Biochemical Sciences vol. 17, (9) 346-347.

Nore BF, Harrison MA, Allen JF (1992) . Purification of the 15 kDa phosphoprotein of Synechococcus 6301. Research in Photosynthesis, Editors: Murata, N, Edition. 4, Kluwer (Dordrecht),

TSINOREMAS NF, CASTETS AM, HARRISON MA et al. (1991) . PHOTOSYNTHETIC ELECTRON-TRANSPORT CONTROLS NITROGEN ASSIMILATION IN CYANOBACTERIA BY MEANS OF POSTTRANSLATIONAL MODIFICATION OF THE GLNB GENE-PRODUCT. P NATL ACAD SCI USA vol. 88, (11) 4565-4569.

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SANDERS CE, MELIS A, ALLEN JF (1989) . INVIVO PHOSPHORYLATION OF PROTEINS IN THE CYANOBACTERIUM SYNECHOCOCCUS 6301 AFTER CHROMATIC ACCLIMATION TO PHOTOSYSTEM-I OR PHOTOSYSTEM-II LIGHT. BIOCHIM BIOPHYS ACTA vol. 976, (2-3) 168-172.

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MELIS A, MULLINEAUX CW, ALLEN JF (1989) . ACCLIMATION OF THE PHOTOSYNTHETIC APPARATUS TO PHOTOSYSTEM-I OR PHOTOSYSTEM-II LIGHT - EVIDENCE FROM QUANTUM YIELD MEASUREMENTS AND FLUORESCENCE SPECTROSCOPY OF CYANOBACTERIAL CELLS. Z NATURFORSCH C vol. 44, (1-2) 109-118.

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HOLMES NG, ALLEN JF (1988) . PROTEIN-PHOSPHORYLATION IN CHROMATOPHORES FROM RHODOSPIRILLUM-RUBRUM. BIOCHIM BIOPHYS ACTA vol. 935, (1) 72-78.

SANDERS CE, ALLEN JF (1988) . EFFECTS OF DIVALENT-CATIONS ON 77-K FLUORESCENCE EMISSION AND ON MEMBRANE-PROTEIN PHOSPHORYLATION IN ISOLATED THYLAKOIDS OF THE CYANOBACTERIUM SYNECHOCOCCUS 6301. BIOCHIM BIOPHYS ACTA vol. 934, (1) 87-95.

MULLINEAUX CW, ALLEN JF (1988) . FLUORESCENCE INDUCTION TRANSIENTS INDICATE DISSOCIATION OF PHOTOSYSTEM-II FROM THE PHYCOBILISOME DURING THE STATE-2 TRANSITION IN THE CYANOBACTERIUM SYNECHOCOCCUS 6301. BIOCHIM BIOPHYS ACTA vol. 934, (1) 96-107.

ALLEN JF, MELIS A (1988) . THE RATE OF P-700 PHOTOOXIDATION UNDER CONTINUOUS ILLUMINATION IS INDEPENDENT OF STATE-1 STATE-2 TRANSITIONS IN THE GREEN-ALGA SCENEDESMUS-OBLIQUUS. BIOCHIM BIOPHYS ACTA vol. 933, (1) 95-106.

Williams RS, Allen JF, Brain APR et al. (1987) . Effect of Mg-2+ on Excitation-Energy Transfer between Lhc-Ii and Lhc-I in a Chlorophyll-Protein Complex. Febs Letters vol. 225, (1-2) 59-66.

Holmes NG, Allen JF (1987) . Protein phosphorylation: a mechanism for control of excitation energy distribution in purple photosynthetic bacteria. Progress in Photosynthesis Research, Editors: Biggins, J, Edition. 1, Nijhoff (Dordrecht),

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Williams WP, Allen JF (1987) . State-1/State-2 Changes in Higher-Plants and Algae. Photosynthesis Research vol. 13, (1) 19-45.

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MULLINEAUX CW, BOULT M, SANDERS CE et al. (1986) . FLUORESCENCE INDUCTION TRANSIENTS INDICATE ALTERED ABSORPTION CROSS-SECTION DURING LIGHT-STATE TRANSITIONS IN THE CYANOBACTERIUM SYNECHOCOCCUS 6301. BIOCHIM BIOPHYS ACTA vol. 851, (1) 147-150.

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HOLMES NG, SANDERS CE, ALLEN JF (1986) . MEMBRANE-PROTEIN PHOSPHORYLATION IN THE PURPLE PHOTOSYNTHETIC BACTERIUM RHODOPSEUDOMONAS-SPHAEROIDES. BIOCHEM SOC T vol. 14, (1) 67-68.

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Allen JF, Findlay JBC (1986) . Amino-Acid-Composition of the 9 Kda Phosphoprotein of Pea Thylakoids. Biochemical and Biophysical Research Communications vol. 138, (1) 146-152.

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Holmes NG, Allen JF (1986) . Protein-Phosphorylation as a Control for Excitation-Energy Transfer in Rhodospirillum-Rubrum. Febs Letters vol. 200, (1) 144-148.

Mullineaux CW, Allen JF (1986) . The State-2 Transition in the Cyanobacterium Synechococcus-6301 Can Be Driven by Respiratory Electron Flow into the Plastoquinone Pool. Febs Letters vol. 205, (1) 155-160.

Allen JF, Sanders CE, Holmes NG (1985) . Correlation of Membrane-Protein Phosphorylation with Excitation-Energy Distribution in the Cyanobacterium Synechococcus-6301. Febs Letters vol. 193, (2) 271-275.

Allen JF (1984) . Photosynthesis and Phosphorylation of Light-Harvesting Chlorophyll-a/B-Protein in Intact Chloroplasts - Effects of Uncouplers. Febs Letters vol. 166, (2) 237-244.

Allen JF (1984) . Protein-Phosphorylation and Optimal Production of Atp in Photosynthesis. Biochemical Society Transactions vol. 12, (5) 774-775.

Saito K, Williams WP, Allen JF et al. (1983) . Comparison of ATP-induced and state 1-state 2 related changes in excitation energy distribution in Chlorella vulgaris. Biochimica Et Biophysica Acta vol. 724, 94-103.

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TELFER A, ALLEN JF, BARBER J et al. (1983) . THYLAKOID PROTEIN-PHOSPHORYLATION DURING STATE-1-STATE-2 TRANSITIONS IN OSMOTICALLY SHOCKED PEA-CHLOROPLASTS. BIOCHIM BIOPHYS ACTA vol. 722, (1) 176-181.

ALLEN JF, HORTON P (1981) . CHLOROPLAST PROTEIN-PHOSPHORYLATION AND CHLOROPHYLL FLUORESCENCE QUENCHING - ACTIVATION BY TETRAMETHYL-PARA-HYDROQUINONE, AN ELECTRON-DONOR TO PLASTOQUINONE. BIOCHIM BIOPHYS ACTA vol. 638, (2) 290-295.

Allen JF, Bennett J, Steinback KE et al. (1981) . Chloroplast Protein-Phosphorylation Couples Plastoquinone Redox State to Distribution of Excitation-Energy between Photosystems. Nature vol. 291, (5810) 25-29.

Allen JF (1981) . Oxygen - a physiological electron acceptor in photosynthesis?. Commentaries in Plant Science, Editors: Smith, H, Edition. 2, Pergamon (Oxford),

ALLEN JF, BENNETT J (1981) . PHOTOSYNTHETIC PROTEIN-PHOSPHORYLATION IN INTACT CHLOROPLASTS - INHIBITION BY DCMU AND BY THE ONSET OF CO2 FIXATION. FEBS LETT vol. 123, (1) 67-70.

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Bennett J, Allen JF (1981) . Thylakoid protein phosphorylation: a regulatory role in photosynthesis. Photosynthesis, Editors: Akoyunoglou, G, Edition. 3, Balaban International Science Services (Philadelphia),

Allen JF, Whatley FR (1978) . Effects of inhibitors of catalase on photosynthesis and on catalase activity in unwashed preparations of intact chloroplasts. Plant Physiol vol. 61, (6) 957-960.

ALLEN JF (1978) . INDUCTION OF A MEHLER REACTION IN CHLOROPLAST PREPARATIONS BY FLAVIN MONO-NUCLEOTIDE - EFFECTS ON PHOTOSYNTHESIS BY INTACT CHLOROPLASTS. PLANT SCI LETT vol. 12, (2) 151-159.

ALLEN JF (1978) . INDUCTION OF A MEHLER REACTION IN CHLOROPLAST PREPARATIONS BY METHYL VIOLOGEN AND BY FERREDOXIN - EFFECTS ON PHOTOSYNTHESIS BY INTACT CHLOROPLASTS. PLANT SCI LETT vol. 12, (2) 161-167.

ALLEN JF (1977) . EFFECTS OF WASHING AND OSMOTIC SHOCK ON CATALASE ACTIVITY OF INTACT CHLOROPLAST PREPARATIONS. FEBS LETT vol. 84, (2) 221-224.

Allen JF (1977) . Oxygen - a physiological electron acceptor in photosynthesis?. Current Advances in Plant Science vol. 9, 459-469.

Allen JF (1977) . Superoxide and photosynthetic reduction of oxygen. Superoxide and Superoxide Dismutases, Editors: Michelson, AM, McCord, JM, Fridovich, I, Academic Press (London and New York),

Allen JF (1975) . 2-Step Mechanism for Photosynthetic Reduction of Oxygen by Ferredoxin. Biochemical and Biophysical Research Communications vol. 66, (1) 36-43.

Allen JF (1975) . Oxygen Reduction and Optimum Production of Atp in Photosynthesis. Nature vol. 256, (5518) 599-600.

Allen JF, Hall DO (1974) . Relationship of Oxygen-Uptake to Electron-Transport in Photosystem-I of Isolated-Chloroplasts - Role of Superoxide and Ascorbate. Biochemical and Biophysical Research Communications vol. 58, (3) 579-585.

Allen JF, Hall DO (1973) . Superoxide Reduction as a Mechanism of Ascorbate-Stimulated Oxygen-Uptake by Isolated Chloroplasts. Biochemical and Biophysical Research Communications vol. 52, (3) 856-862.