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Publications:  Dr Laurent Frantz

Liu L, Bosse M, Megens HJ, Frantz LAF, Lee YL, Irving-Pease EK, Narayan G, Groenen MAM et al.(2019). Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion. Nature Communications vol. 10, (1)
10.1038/s41467-019-10017-2
https://qmro.qmul.ac.uk/xmlui/handle/123456789/58779
Frantz LAF, Haile J, Lin AT, Scheu A, Geörg C, Benecke N, Alexander M, Linderholm A et al.(2019). Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe. Proceedings of the National Academy of Sciences of the United States of America vol. 116, (35) 17231-17238.
10.1073/pnas.1901169116
https://qmro.qmul.ac.uk/xmlui/handle/123456789/60988
Velsko IM, Fellows Yates JA, Aron F, Hagan RW, Frantz LAF, Loe L, Martinez JBR, Chaves E et al.(2019). Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage. Microbiome vol. 7, (1)
10.1186/s40168-019-0717-3
https://qmro.qmul.ac.uk/xmlui/handle/123456789/58778
Kuang WM, Ming C, Li HP, Wu H, Frantz L, Roos C, Zhang YP, Zhang CL et al.(2019). The Origin and Population History of the Endangered Golden Snub-Nosed Monkey (Rhinopithecus roxellana). Molecular Biology and Evolution vol. 36, (3) 487-499.
10.1093/molbev/msy220
FRANTZ LAF(2018). Paleogenomics of Animal Domestication.
https://qmro.qmul.ac.uk/xmlui/handle/123456789/46323
Ollivier M, Tresset A, Frantz LAF, Bréhard S, B¿l¿¿escu A, Mashkour M, Boroneant A, Pionnier-Capitan M et al.(2018). Dogs accompanied humans during the Neolithic expansion into Europe. Biology Letters vol. 14, (10)
10.1098/rsbl.2018.0286
Beeravolu CR, Hickerson MJ, Frantz LAF, Lohse K(2018). ABLE: blockwise site frequency spectra for inferring complex population histories and recombination. Genome Biology vol. 19, (1)
10.1186/s13059-018-1517-y
https://qmro.qmul.ac.uk/xmlui/handle/123456789/46284
FRANTZ LAF, LARSON G(2018). A genetic perspective on the domestication continuum. Hybrid Communities: Biosocial Approaches to Domestication and Other Trans-species Relationships, Taylor & Francis
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53406
FRANTZ LAF(2018). The Evolutionary History of Dogs in the Americas. Science
10.1126/science.aao4776
https://qmro.qmul.ac.uk/xmlui/handle/123456789/42103
Velsko IM, Frantz LAF, Herbig A, Larson G, Warinner C(2018). Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research. mSystems vol. 3, (4)
10.1128/mSystems.00080-18
https://qmro.qmul.ac.uk/xmlui/handle/123456789/46265
Frantz LAF, Rudzinski A, Nugraha AMS, Evin A, Burton J, Hulme-Beaman A, Linderholm A, Barnett R et al.(2018). Synchronous diversification of sulawesi’s iconic artiodactyls driven by recent geological events. Proceedings of the Royal Society B: Biological Sciences vol. 285, (1876)
10.1098/rspb.2017.2566
https://qmro.qmul.ac.uk/xmlui/handle/123456789/36523
Irving-Pease EK, Frantz LAF, Sykes N, Callou C, Larson G(2018). Rabbits and the Specious Origins of Domestication. Trends Ecol Evol vol. 33, (3) 149-152.
10.1016/j.tree.2017.12.009
https://qmro.qmul.ac.uk/xmlui/handle/123456789/34474
Velsko IM, Overmyer KA, Speller C, Klaus L, Collins MJ, Loe L, Frantz LAF, Sankaranarayanan K et al.(2017). The dental calculus metabolome in modern and historic samples. Metabolomics vol. 13, (11) 134-134.
10.1007/s11306-017-1270-3
https://qmro.qmul.ac.uk/xmlui/handle/123456789/32128
Prendergast ME, Buckley M, Crowther A, Frantz L, Eager H, Lebrasseur O, Hutterer R, Hulme-Beaman A et al.(2017). Reconstructing Asian faunal introductions to eastern Africa from multi-proxy biomolecular and archaeological datasets. PLOS ONE vol. 12, (8) e0182565-e0182565.
10.1371/journal.pone.0182565
https://qmro.qmul.ac.uk/xmlui/handle/123456789/32138
Adeola AC, Oluwole OO, Oladele BM, Olorungbounmi TO, Boladuro B, Olaogun SC, Nneji LM, Sanke OJ et al.(2017). Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs. Genet Sel Evol vol. 49, (1) 52-52.
10.1186/s12711-017-0326-1
https://qmro.qmul.ac.uk/xmlui/handle/123456789/32136
Bosse M, Lopes MS, Madsen O, Megens HJ, Crooijmans RPMA, Frantz LAF, Harlizius B, Bastiaansen JWM et al.(2016). Artificial selection on introduced Asian haplotypes shaped the genetic architecture in european commercial pigs. Proceedings of the Royal Society B: Biological Sciences vol. 282, (1821)
10.1098/rspb.2015.2019
Linderholm A, Spencer D, Battista V, Frantz L, Barnett R, Fleischer RC, James HF, Duffy D et al.(2016). A novel MC1R allele for black coat colour reveals the Polynesian ancestry and hybridization patterns of Hawaiian feral pigs. Royal Society Open Science vol. 3, (9) 160304-160304.
10.1098/rsos.160304
https://qmro.qmul.ac.uk/xmlui/handle/123456789/32504
Frantz LAF, Mullin VE, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V et al.(2016). Genomic and archaeological evidence suggest a dual origin of domestic dogs. Science vol. 352, (6290) 1228-1231.
10.1126/science.aaf3161
https://qmro.qmul.ac.uk/xmlui/handle/123456789/32135
Frantz L, Meijaard E, Gongora J, Haile J, Groenen MAM, Larson G(2016). The Evolution of Suidae. Annual Review of Animal Biosciences vol. 4, (1) 61-85.
10.1146/annurev-animal-021815-111155
Paudel Y, Madsen O, Megens HJ, Frantz LAF, Bosse M, Crooijmans RPMA, Groenen MAM(2015). Copy number variation in the speciation of pigs: A possible prominent role for olfactory receptors. BMC Genomics vol. 16, (1)
10.1186/s12864-015-1449-9
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53414
Bunnefeld L, Frantz LAF, Lohse K(2015). Inferring bottlenecks from genome-wide samples of short sequence blocks. Genetics vol. 201, (3) 1157-1169.
10.1534/genetics.115.179861
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53407
Frantz LAF, Schraiber JG, Madsen O, Megens HJ, Cagan A, Bosse M, Paudel Y, Crooijmans RPMA et al.(2015). Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes. Nature Genetics vol. 47, (10) 1141-1148.
10.1038/ng.3394
Frantz LAF, Madsen O, Megens HJ, Schraiber JG, Paudel Y, Bosse M, Crooijmans RPMA, Larson G et al.(2015). Evolution of Tibetan wild boars. Nature Genetics vol. 47, (3) 188-189.
10.1038/ng.3197
Bosse M, Megens HJ, Frantz LAF, Madsen O, Larson G, Paudel Y, Duijvesteijn N, Harlizius B et al.(2014). Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression. Nature Communications vol. 5,
10.1038/ncomms5392
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53408
Rowntree JK, Zytynska SE, Frantz L, Hurst B, Johnson A, Preziosi RF(2014). The genetics of indirect ecological effects—plant parasites and aphid herbivores. Frontiers in Genetics vol. 5,
10.3389/fgene.2014.00072
Bosse M, Madsen O, Megens HJ, Frantz LAF, Paudel Y, Crooijmans RPMA, Groenen MAM(2014). Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1. Frontiers in Genetics vol. 5, (DEC)
10.3389/fgene.2014.00442
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53410
Lohse K, Frantz LAF(2014). Neandertal admixture in eurasia confirmed by maximum-likelihood analysis of three genomes. Genetics vol. 196, (4) 1241-1251.
10.1534/genetics.114.162396
Frantz LAF, Madsen O, Megens HJ, Groenen MAM, Lohse K(2014). Testing models of speciation from genome sequences: Divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations. Molecular Ecology vol. 23, (22) 5566-5574.
10.1111/mec.12958
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53409
Bosse M, Megens HJ, Madsen O, Frantz LAF, Paudel Y, Crooijmans RPMA, Groenen MAM(2014). Untangling the hybrid nature of modern pig genomes: A mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations. Molecular Ecology vol. 23, (16) 4089-4102.
10.1111/mec.12807
Zytynska SE, Frantz L, Hurst B, Johnson A, Preziosi RF, Rowntree JK(2014). Host-plant genotypic diversity and community genetic interactions mediate aphid spatial distribution. Ecology and Evolution vol. 4, (2) 121-131.
10.1002/ece3.916
Frantz LAF, Schraiber JG, Madsen O, Megens HJ, Bosse M, Paudel Y, Semiadi G, Meijaard E et al.(2013). Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus. Genome Biology vol. 14, (9)
10.1186/gb-2013-14-9-r107
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53411
Paudel Y, Madsen O, Megens HJ, Frantz LAF, Bosse M, Bastiaansen JWM, Crooijmans RPMA, Groenen MAM(2013). Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication. BMC Genomics vol. 14, (1)
10.1186/1471-2164-14-449
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53412
Groenen MAM, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C et al.(2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature vol. 491, (7424) 393-398.
10.1038/nature11622
Bosse M, Megens HJ, Madsen O, Paudel Y, Frantz LAF, Schook LB, Crooijmans RPMA, Groenen MAM(2012). Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape. PLoS Genetics vol. 8, (11)
10.1371/journal.pgen.1003100
https://qmro.qmul.ac.uk/xmlui/handle/123456789/53413
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